Rtips RactIP: RNA-RNA interACTion prediction using IP

Version 1.2.1
Last modified: 2014-03-10

Overview

The RactIP web server provides services for predicting RNA joint secondary structures under the general type of interaction including kissing hairpins. RactIP runs fast and predicts the maximum expected accuracy (MEA) structure using integer programming (IP) with threshold cut. The IP problem is solved by GNU Linear Programming Kit (GLPK). Detailed instructions for use are found here.

Interface

Enter your first RNA sequence here (FASTA format, or only a sequence in 5'–3' direction).

    Or upload your FASTA format file:

Enter your second RNA sequence here (FASTA format, or only a sequence in 5'–3' direction).

    Or upload your FASTA format file:


Options

You can adjust several parameters. If you do not change the parameters, the default values will be submitted to the server.

  

Downloads


If you have any questions, please contact Yuki Kato, Kengo Sato.

Graduate School of Information Science, Nara Institute of Science and Technology (NAIST)
Department of Biosciences and Informatics, Keio University, Japan

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